PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00144257001
Common NameGSBRNA2T00144257001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GeBP
Protein Properties Length: 603aa    MW: 65235.9 Da    PI: 4.6341
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00144257001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573117.19.7e-37310408298
               DUF573   2 lfqrlwseeDeivlLqGlidf.kaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkif 89 
                          lfqrlw++eDei lL+G++d+ ++++g+s++  d+  fye++k++++++++k+qlveK+rrLKkK+++ ++k +sgke++f+++hdq +f
  GSBRNA2T00144257001 310 LFQRLWTDEDEIELLRGFLDYvATHRGTSSHPpDTAPFYEQIKSKLQLEFNKNQLVEKLRRLKKKYRNVMSKFSSGKEVVFKSSHDQATF 399
                          79*******************8889***99999********************************************************* PP

               DUF573  90 elskkiWgs 98 
                          ++s+kiW++
  GSBRNA2T00144257001 400 DISRKIWNQ 408
                          *******85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.140.101.1E-4225146No hitNo description
SuperFamilySSF539271.65E-3926144IPR016193Cytidine deaminase-like
PROSITE profilePS5174723.60629143IPR002125Cytidine and deoxycytidylate deaminases, zinc-binding
PfamPF003836.0E-2230129IPR002125Cytidine and deoxycytidylate deaminases, zinc-binding
CDDcd012857.26E-4435142No hitNo description
PROSITE patternPS00903081118IPR016192APOBEC/CMP deaminase, zinc-binding
PfamPF045042.7E-33311407IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
GO:0016787Molecular Functionhydrolase activity
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MEYVCVVEAK DGTISVATAF AGHQQAVQDS DHKFLTQAVE EAYKGVDCGD GGPFGAVIVH  60
KNEVVASCHN MVLKYTDPTA HAEVTAIREA CKKLNQIELS ECEIYASCEP CPMCFGAIHL  120
SRLKRLVYGA KAEAAIAIGF DDFIADALRG TGVYQKSNLE IKKADGNGAA IAEQVFQNTK  180
EKFQEEEEMS PSDEREAVFS LESPELEEDG SGGGGGGGAG GETDSDEEAV IPEPNAPDED  240
DDHEYEDLNS PLVSAAAKSS SAATDTVTVA LPAGSAVPVS SIPADSDPKW HRTTEIVHLR  300
PPPLDDSRRL FQRLWTDEDE IELLRGFLDY VATHRGTSSH PPDTAPFYEQ IKSKLQLEFN  360
KNQLVEKLRR LKKKYRNVMS KFSSGKEVVF KSSHDQATFD ISRKIWNQTG KIIGFEDNNV  420
MEFEETNGNN AHVEVDSENV LEKKGTVSSG SRKRPRSRIG KIDEDKAVSL SDGPVPSVNL  480
NENVSAFGEF GDGRNLGGLI EETVKSCVSP LIKEMMNGTT GMMMAAVGGF PGGGGAHAMG  540
VLSPMLMPSV NPLGFGGGGG VGDERWRRQQ ILELEVYSRR LELVQEQIRA TVNELKTMPS  600
GG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wkq_A2e-303414214122Guanine deaminase
1wkq_B2e-303414214122Guanine deaminase
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.63650.0flower| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00144257001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4584090.0AF458409.1 Brassica oleracea deoxycytidine deaminase (DCTD1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009151238.10.0PREDICTED: mediator-associated protein 1
TrEMBLA0A078DFV30.0A0A078DFV3_BRANA; BnaA06g29050D protein
STRINGBra009986.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30982764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.11e-170DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]